Collaboration diagram for Steps(functors) of the reconstruction framework (odinreco):
Classes | |
| class | RecoAdcBaseline |
| adc_baseline: Baseline correction of ADCs More... | |
| class | RecoAdcGridPrep |
| adc_gridprep: Prepare ADC for gridding (ramp sampling) More... | |
| class | RecoAdcPad |
| adc_pad: Pad missing points by zeroes More... | |
| class | RecoAdcReflect |
| adc_reflect: Reflect ADC if recoReflectBit is set More... | |
| class | RecoAdcWeight |
| adc_weight: Weight ADC using weightVec More... | |
| class | RecoB1Fit |
| b1fit: B1-mapping method based on: Fast, Accurate, and Precise Mapping of the RF Field In Vivo Using the 180 Signal Null. Dowell et al., Magn Reson Med 58 (2007). More... | |
| class | RecoBladeComb |
| bladecomb: Pre-processing of PROPELLER blades: coordinate rotation for gridding More... | |
| class | RecoBladeCorr |
| bladecorr: Pre-processing of PROPELLER blades: phase correction More... | |
| class | RecoBladeGrid |
| gridblade: grid kspace center of single blades More... | |
| class | RecoChannelSum |
| chansum: Combine images from different channels More... | |
| class | RecoCircMask |
| circmask: Cut out central circular region. More... | |
| class | RecoCollector< Nin, In, Ncoll, Coll, use_numof > |
| averagecoll, chancoll, chanrepcoll, chanrepslicecoll, cyclecoll, driftcoll, echocoll, freqcoll, image, kspace, line3dcoll, repcoll, slicecoll, tecoll, usercoll: Collect data in one or more dimensions More... | |
| class | RecoConjPhaseFT |
| conjphase: Discrete Fourier transform with conjugate-phase correction according to field map More... | |
| class | RecoCycleRot |
| cyclerot: In-plane rotation according to cycle index More... | |
| class | RecoDTI |
| dti: DTI preprocessing More... | |
| class | RecoDeapodize< NDim > |
| deapodize1d, deapodize2d: De-apodize gridded data in 2 dimensions More... | |
| class | RecoDebug |
| debug: Write messages to log More... | |
| class | RecoDriftCalc |
| driftcalc: Calculate field drift for each repetition More... | |
| class | RecoDriftCorr |
| driftcorr: Correct for linear field drift over repetitions More... | |
| class | RecoDump |
| dump: Dump current data in reconstruction pipeline More... | |
| class | RecoEpiNavCorr |
| epinavcorr: Apply Siemens EPI phase correction More... | |
| class | RecoEpiNavScan |
| epinavscan: Calculate and post data for Siemens EPI phase correction More... | |
| class | RecoExpFit |
| expfit: Fit exponential decay constant using x-values associated with 'userdef' dimension. More... | |
| class | RecoFFT |
| fft: Fast Fourier Transform More... | |
| class | RecoFMRI |
| fmri: Simple fMRI analysis for fMRI localizer More... | |
| class | RecoFieldMap |
| fieldmap: Calculate fieldmap More... | |
| class | RecoFilter |
| filter: Lowpass filter in k-space with plateau at the center More... | |
| class | RecoFreqComb |
| freqcomb: Combine multi-frequency images using fieldmap More... | |
| class | RecoGrappa< interpolDim, orthoDim, interpolIndex, orthoIndex > |
| grappa, grappa3d: Perform GRAPPA interpolation in dimension 'line3d' More... | |
| class | RecoGrappaWeights< interpolDim, orthoDim, interpolIndex, orthoIndex, Ignore > |
| grappaweights, grappaweights3d, grappaweightstempl, grappaweightstempl3d: Calculate GRAPPA weights in dimension 'line3d' and post them on the blackboard with the label 'grappaweights_line3d'. More... | |
| class | RecoGrid< NDim > |
| grid1d, grid2d: Grid signal data with arbitrary k-space trajectory in 2 dimensions More... | |
| class | RecoGridCut |
| gridcut: Cut out central part of image to remove effects from gridding on a denser grid More... | |
| class | RecoHalfFour |
| halffour: Mirror k-space of half-Fourier acquisition More... | |
| class | RecoHomodyne |
| homodyne: Homodyne reconstruction of partial Fourier data More... | |
| class | RecoMagn |
| magn: Only take magnitude and set phase to zero More... | |
| class | RecoMesser |
| messer: Postprocessing for MESSER sequence More... | |
| class | RecoMip |
| mip: Maximum intensity projection in slice direction More... | |
| class | RecoMultiFreq |
| multifreq: Generate multi-frequency ADCs based on fieldmap More... | |
| class | RecoOffset |
| offset: Create phase gradient in k-space so that image is shifted after FFT More... | |
| class | RecoOversampling |
| oversampling: Remove oversampling in readout direction in image domain More... | |
| class | RecoPhaseCorr |
| phasecorr: Apply echo-by-echo phase correction More... | |
| class | RecoPhaseCourse |
| phasecourse: Combine phase timecourse from multi-channel data More... | |
| class | RecoPhaseMap |
| phasemap: Calculate and post phasemap for echo-by-echo phase correction More... | |
| class | RecoPilot |
| pilot: Modify geometry for pilot output More... | |
| class | RecoPost |
| post: Post data on blackboard More... | |
| class | RecoQualityControlSpike |
| qcspike: Check for spikes in data More... | |
| class | RecoReal |
| real: Throw away imaginary part of data and keep only real part More... | |
| class | RecoRefGain |
| refgain: Calculate reference gain (Bruker) More... | |
| class | RecoSliceTime |
| slicetime: Slice-time correction for data with multiple repetitions More... | |
| class | RecoSlidingWindow |
| slidingwindow: Generate sliding window data More... | |
| class | RecoSplitter< Nunmod, Unmod, Nsplit, Split > |
| chansplit, repsplit: Split data in one or more dimensions More... | |
| class | RecoStore |
| store: Store reconstructed images More... | |
| class | RecoSum< Nunmod, Unmod, Nsum, Sum, Magn > |
| averagesum, cyclesum, repmagnsum, repsum: Sum up data in one or more dimensions More... | |
| class | RecoSwi |
| swi: Susceptibility weighted imaging More... | |
| class | RecoSwitch |
| switch: Branch off different flows through reconstruction pipeline More... | |
| class | RecoT1Fit |
| t1fit: Calculate T1 relaxation time using data from Look-Locker sequence More... | |
| class | RecoZeroFill |
| zerofill: Fill k-space with zeroes to match matrix size of protocol More... | |
Detailed Description
These steps(functors) can be used within the ODIN image reconstruction framework (odinreco)
