View medical images

miview: Viewer for medical image files
        File formats are automatically identified by their file extension.
usage: miview [ -options ] <image-file>
 global options:
	-blowup: Enlarge display size by this factor (default=1)
	-bright: Relative brightness of display (default=0.0)
	-color: Use color map to display values
	-contrast: Relative contrast of display (default=0.0)
	-dump: Dump all images as bitmap(bmp) files and exit, use the given filename prefix
	-low: Lower windowing boundary: This value will appear black in display
	-map: Load overlay map (colored voxels superimposed on image) from this file
	-maplegend: Export map legend as bitmap to this file
	-maplow: Lower windowing boundary for overlay map (default=0.0)
	-maprect: Relative size of rectangles which represent voxels of the overlay map (default=0.80)
	-mapupp: Upper windowing boundary for overlay map (default=0.0)
	-noscale: Disable scale in 2D/3D display
	-upp: Upper windowing boundary: This value will appear white in display
	-val: Save value of ROI/point selection to this file
	-v <loglevel> or <component:loglevel> for debugging/tracing all components or a sinlge component, respectively. Possible values for loglevel are: 0(noLog), 1(errorLog), 2(warningLog), 3(infoLog), 4(significantDebug), 5(normalDebug), 6(verboseDebug).
 fMRI options (Give at least -design and -fmri to activate):
	-bonferr: Use Bonferroni correction
	-corr: Error probability for correlation (default=1.00000e-03)
	-design: Load fMRI design from this file (comma or space separated)
	-fmask: fMRI mask file
	-fmri: Load fMRI data from this file
	-neighb: Minimum next neighbours with significant activation (default=1)
 File read options:
	-fx: FOV in read direction [mm] (default=220.0mm)
	-fy: FOV in phase direction [mm] (default=220.0mm)
	-nr: Number of consecutive measurements (default=1)
	-nx: Spatial resolution in read direction (default=1)
	-ny: Spatial resolution in phase direction (default=1)
	-pbirth: Patients date of birth in <year><mont><day> (default=19730913)
	-pid: Unique patient identifier (default=Unknown)
	-pname: Full patient name (default=Unknown)
	-psex: Patients sex (options=M F O , default=O)
	-pweight: Patients weight [kg] (default=50.0kg)
	-scient: Scientist Name (default=Unknown)
	-sd: Inter-slice distance (from center to center) [mm] (default=10.0mm)
	-serd: Series Description (default=Unknown)
	-serno: Series Number (default=1)
	-st: Slice thickness [mm] (default=5.0mm)
	-stud: Study Description (default=Unknown)
	-tcname: TransmitCoil Name (default=Unknown)
	-te: Time-to-echo of the sequence [ms] (default=80.0ms)
	-tr: Time between consecutive excitations [ms] (default=1000.0ms)
	-abs: Treat data as complex and extract magnitude
	-dir: Try to combine multiple files found in directory
	-ds: Dataset index to extract if multiple datasets are read
	-filter: Read only those datasets which protocol parameter 'key' contains the string 'value' (given in the format 'key=value')
	-jdx: If multiple JDX arrays are present, select this
	-pha: Treat data as complex and extract the phase
	-rdialect: Read data using given dialect of the format. (default is no dialect)
	-rf: Read format, use it to override file extension (options=autodetect asc coi dat dcm double float gz hdr ima img jdx mag mhd nii ph pos s16bit s32bit s8bit smp u16bit u32bit u8bit v vtk , default=autodetect)
	-skip: Skip this amount of bytes before reading the raw data (default=0)
 Filters:
	-max <Maximum value> : Clip all values above maximum value
	-min <Minumum value> : Clip all values below mininum value
	-noNaN <Replacement value> : Replaces every NaN by the given value
	-pflip : Flip data in phase direction
	-prange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in phase direction
	-resize <slice-size,phase-size,read-size> : Resize image data
	-reslice <requested orientation> : reslices the image to have a given orientation if necessary
	-rflip : Flip data in read direction
	-rot <Rotate by this angle> : In-plane rotation
	-rrange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in read direction
	-scale <Slope,Offset> : Rescale image values
	-sflip : Flip data in slice direction
	-srange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in slice direction
	-trange <Single value or range, optionally with increment (e.g. 1-10:3)> : Select range in time direction
	-typemax <Datatype> : Clip all values above maximum of a specific datatype
	-typemin <Datatype> : Clip all values below mininum of a specific datatype
Supported file extensions(formats):
	asc 	 (ASCII)
	coi 	 (JCAMP-DX data sets)
	dat 	 (Matlab ascii 2D data matrix)
	dcm 	 (DICOM)
	double 	 (double raw data)
	float 	 (float raw data)
	gz 	 (GNU-Zip container for other formats)
	hdr 	 (ANALYZE)
	ima 	 (DICOM)
	img 	 (ANALYZE)
	jdx 	 (JCAMP-DX image format)
	mag 	 (DICOM)
	mhd 	 (MetaImage)
	nii 	 (NIFTI, dialects: fsl )
	ph 	 (DICOM)
	pos 	 (x-y positions of non-zeroes in ASCII)
	s16bit 	 (signed 16 bit raw data)
	s32bit 	 (signed 32 bit raw data)
	s8bit 	 (signed 8 bit raw data)
	smp 	 (JCAMP-DX data sets)
	u16bit 	 (unsigned 16 bit raw data)
	u32bit 	 (unsigned 32 bit raw data)
	u8bit 	 (unsigned 8 bit raw data)
	v 	 (Vista, dialects: common odin lipsia xlipsia )
	vtk 	 (Visualization Toolkit)
View medical images

Some examples how to use miview:
