SeqSimMagsi Class Reference
[Classes for sequence design (odinseq library)]

MAGSI-based Magnetization Simulator. More...

#include <seqsim.h>

Inheritance diagram for SeqSimMagsi:

[legend]Collaboration diagram for SeqSimMagsi:

[legend]List of all members.

Public Member Functions
	SeqSimMagsi (const STD_string &label="unnamedSeqSimMagsi")
	SeqSimMagsi (const SeqSimMagsi &ssm)
	~SeqSimMagsi ()
SeqSimMagsi &	operator= (const SeqSimMagsi &ssm)
SeqSimMagsi &	operator+= (const SeqSimMagsi &ssm)
unsigned int	get_total_size () const
SeqSimMagsi &	set_tozero ()
SeqSimMagsi &	reset_magnetization ()
SeqSimMagsi &	set_initial_vector (float Mx, float My, float Mz)
const farray &	get_Mx () const
const farray &	get_My () const
const farray &	get_Mz () const
const farray &	get_Mamp () const
const farray &	get_Mpha () const
SeqSimMagsi &	update ()
SeqSimMagsi &	set_online_simulation (bool onlineflag)
SeqSimMagsi &	set_intravoxel_simulation (bool ivflag)
SeqSimMagsi &	set_spat_rotmatrix (const RotMatrix &rotmatrix)
bool	do_simulation ()
void	prepare_simulation (const Sample &sample, CoilSensitivity *transmit_coil=0, CoilSensitivity *receive_coil=0, ProgressMeter *progmeter=0)
cvector	simulate (const SeqSimInterval &simvals, double gamma)
void	finalize_simulation ()
Friends
class	SeqTimecourse

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Detailed Description

MAGSI-based Magnetization Simulator.

This is a simulator to calculate the time evolution of a magnetization grid in 4 dimension (frequency and three spatial dimensions). This simulation of the Bloch-Torrey equations is performed by means of the MAGSI algorith (c.f. Journal of Magnetic Resonance 180:29-38, 2006). Simulation usually involves the following steps:

• Initialize the simulator by prepare_simulation() using a virtual sample.
• Iterative simulation by simulate() using a structure with piece-wise constant fields.
• Finish simulation by calling finalize_simulation().

Definition at line 112 of file seqsim.h.

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Constructor & Destructor Documentation

SeqSimMagsi::SeqSimMagsi

(

const STD_string &

label = "unnamedSeqSimMagsi"

)

Constructs a simulator labeled 'object_label'.

SeqSimMagsi::SeqSimMagsi

(

const SeqSimMagsi &

ssm

)

Copy constructor

SeqSimMagsi::~SeqSimMagsi

(

)

Destructor

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Member Function Documentation

SeqSimMagsi& SeqSimMagsi::operator=

(

const SeqSimMagsi &

ssm

)

Assignment operator

SeqSimMagsi& SeqSimMagsi::operator+=

(

const SeqSimMagsi &

ssm

)

Add magnetization vector 'sm' to this

unsigned int SeqSimMagsi::get_total_size

(

)

const [inline]

Returns the overall size of the array

Definition at line 144 of file seqsim.h.

SeqSimMagsi& SeqSimMagsi::set_tozero

(

)

Initialises the magnetization vector to zero

SeqSimMagsi& SeqSimMagsi::reset_magnetization

(

)

Set each magnetization to initial state 'initial_vector', which is (0,0,1) by default

SeqSimMagsi& SeqSimMagsi::set_initial_vector	(	float	Mx,
		float	My,
		float	Mz
	)

Set the vector for the initial magnetization

const farray& SeqSimMagsi::get_Mx

(

)

const [inline]

Returns the real part of the transverse magnetisation

Definition at line 164 of file seqsim.h.

const farray& SeqSimMagsi::get_My

(

)

const [inline]

Returns the imaginary part of the transverse magnetisation

Definition at line 169 of file seqsim.h.

const farray& SeqSimMagsi::get_Mz

(

)

const [inline]

Returns the longitudinal magnetisation

Definition at line 174 of file seqsim.h.

const farray& SeqSimMagsi::get_Mamp

(

)

const [inline]

Returns the amplitude of the transverse magnetisation

Definition at line 179 of file seqsim.h.

const farray& SeqSimMagsi::get_Mpha

(

)

const [inline]

Returns the phase of the transverse magnetisation

Definition at line 184 of file seqsim.h.

SeqSimMagsi& SeqSimMagsi::update

(

)

Updates all parameter relations

SeqSimMagsi& SeqSimMagsi::set_online_simulation

(

bool

onlineflag

)

[inline]

Specifies whether simulation should be performed everytime update() is called

Definition at line 195 of file seqsim.h.

SeqSimMagsi& SeqSimMagsi::set_intravoxel_simulation

(

bool

ivflag

)

[inline]

Specifies whether intra-voxel magnetzation gradients are considered during simulation

Definition at line 201 of file seqsim.h.

SeqSimMagsi& SeqSimMagsi::set_spat_rotmatrix

(

const RotMatrix &

rotmatrix

)

Specifies a rotation matrix for the spatial domain, i.e. the magnetization array will be rotated in space using the specified rotation matrix.

bool SeqSimMagsi::do_simulation

(

)

Returns whether simulation should be performed, i.e. whether online flag is true or refresh was activated.

void SeqSimMagsi::prepare_simulation	(	const Sample &	sample,
		CoilSensitivity *	transmit_coil = 0,
		CoilSensitivity *	receive_coil = 0,
		ProgressMeter *	progmeter = 0
	)			[virtual]

Prepare a simulation (i.e. before successive calls to simulate() ) with the parameters:

• sample: The virtual sample
• transmit_coil: Transmitter coil, 0 for none
• receive_coil: Receiver coil, 0 for none
• progmeter: Status indicator to trace progress, 0 for none

Implements SeqSimAbstract.

cvector SeqSimMagsi::simulate	(	const SeqSimInterval &	simvals,
		double	gamma
	)			[virtual]

Simulation with

• simvals: The magnetic fields during a time interval
• gamma: Gyromagnetic ration of the nucleus observed Return value: Signal in each receiver channel

Implements SeqSimAbstract.

void SeqSimMagsi::finalize_simulation

(

)

[virtual]

Call this function after a simulation (i.e. after successive calls to simulate() )

Implements SeqSimAbstract.

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The documentation for this class was generated from the following file:

• seqsim.h

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